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NDR-matlab
Options3D
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NDR-matlab
GitHub
Home
Installation
Tutorials
Tutorials
1 Reading analog data
2 Reading digital data
3 Reading events
4 Add a new file format
Contributing
Code reference
Code reference
ndr_Init
ndr PACKAGE
ndr PACKAGE
ndr.globals
ndr.reader
data PACKAGE
data PACKAGE
ndr.data.assign
ndr.data.colvec
ndr.data.rowvec
ndr.data.struct2namevaluepair
docs PACKAGE
docs PACKAGE
ndr.docs.build
file PACKAGE
file PACKAGE
ndr.file.fileobj
ndr.file.textfile2char
format PACKAGE
format PACKAGE
ced PACKAGE
ced PACKAGE
ndr.format.ced.read_SOMSMR_datafile
ndr.format.ced.read_SOMSMR_header
ndr.format.ced.read_SOMSMR_sampleinterval
intan PACKAGE
intan PACKAGE
ndr.format.intan.Intan_RHD2000_blockinfo
ndr.format.intan.cat_Intan_RHD2000_files
ndr.format.intan.concat_rhd_files
ndr.format.intan.copy_Intan_RHD2000_blocks
ndr.format.intan.fread_QString
ndr.format.intan.read_Intan_RHD2000_datafile
ndr.format.intan.read_Intan_RHD2000_directory
ndr.format.intan.read_Intan_RHD2000_header
spikegadgets PACKAGE
spikegadgets PACKAGE
ndr.format.spikegadgets.copy_rec_files
ndr.format.spikegadgets.read_rec_analogChannels
ndr.format.spikegadgets.read_rec_config
ndr.format.spikegadgets.read_rec_digitalChannels
ndr.format.spikegadgets.read_rec_trodeChannels
fun PACKAGE
fun PACKAGE
ndr.fun.ndrpath
ndr.fun.ndrresource
reader PACKAGE
reader PACKAGE
ndr.reader.base
ndr.reader.ced_smr
ndr.reader.intan_rhd
ndr.reader.neo
ndr.reader.somecompany_someformat
ndr.reader.spikegadgets_rec
string PACKAGE
string PACKAGE
ndr.string.channelstring2channels
ndr.string.intseq2str
ndr.string.str2intseq
test PACKAGE
test PACKAGE
format PACKAGE
format PACKAGE
ced PACKAGE
ced PACKAGE
ndr.test.format.ced.test
intan_rhd PACKAGE
intan_rhd PACKAGE
ndr.test.format.intan_rhd.test
spikegadgets PACKAGE
spikegadgets PACKAGE
ndr.test.format.spikegadgets.test
reader PACKAGE
reader PACKAGE
ced_smr PACKAGE
ced_smr PACKAGE
ndr.test.reader.ced_smr.automatedTest
ndr.test.reader.ced_smr.readertest
ndr.test.reader.ced_smr.test
intan_rhd PACKAGE
intan_rhd PACKAGE
ndr.test.reader.intan_rhd.readertest
ndr.test.reader.intan_rhd.test
neo PACKAGE
neo PACKAGE
ndr.test.reader.neo.automatedTest
spikegadgets_rec PACKAGE
spikegadgets_rec PACKAGE
ndr.test.reader.spikegadgets_rec.readertest
ndr.test.reader.spikegadgets_rec.test
time PACKAGE
time PACKAGE
ndr.time.clocktype
ndr.time.timereference
lib FOLDER
lib FOLDER
NPMK FOLDER
NPMK FOLDER
NPMKverChecker
installNPMK
openNEV
openNSx
openNSxSync
KTFigure FOLDER
KTFigure FOLDER
KTFigure
KTFigureAxis FOLDER
KTFigureAxis FOLDER
KTFigureAxis
KTNEVComments FOLDER
KTNEVComments FOLDER
KTNEVComments
KTNSPOnline FOLDER
KTNSPOnline FOLDER
KTNSPOnline
KTUEAImpedanceFile FOLDER
KTUEAImpedanceFile FOLDER
KTUEAImpedanceFile
KTUEAMapFile FOLDER
KTUEAMapFile FOLDER
KTUEAMapFile
Dependent Functions FOLDER
Dependent Functions FOLDER
getFile
getFolder
getSettingFileFullPath
parseCommand
syncPatternDetectNEV
syncPatternDetectNSx
syncPatternFinderNSx
LoadingEngines FOLDER
LoadingEngines FOLDER
MClust FOLDER
MClust FOLDER
BlackrockNEVLoadingEngine
NEV Utilities FOLDER
NEV Utilities FOLDER
findEventTimes
mergeNEV
openNEVTracking
saveNEV
saveNEVSpikes
saveNEVSubSpikes
sortNEV
splitNEVResets
NSx Utilities FOLDER
NSx Utilities FOLDER
NSxPowerSpectrum
NSxToHL
calcTimeDelay
combineNSxNEV
findSpikes
matrixToNSx
mergeNSxNEV
mergeNSxNEVSeries
openNSxHL
plotAverageWaveforms
removeNSxData
rethresholdNSx
saveChNSx
saveNSx
separatePausedNSx
separatePausedNSx_old
splitNSx
splitNSxPauses
NTrode Utilities FOLDER
NTrode Utilities FOLDER
ntrodeGroups
saveNEVTetrodes
splitNEVNTrode
splitNSxNTrode
Other tools FOLDER
Other tools FOLDER
edgeDetect
kshuffle
offline2Struct
openCCF
parseCCF
periEventPlot
playSound
sigTOOL FOLDER
sigTOOL FOLDER
CORE FOLDER
CORE FOLDER
Edit FOLDER
Edit FOLDER
menu_CopyFigure
File FOLDER
File FOLDER
menu_BatchProcess
menu_Preferences
menu_aSaveAs
menu_aaOpenResult
menu_aaaOpen
menu_aabNew
group_FastOpenSave FOLDER
group_FastOpenSave FOLDER
menu_FastOpen
menu_FastSave
group_Info FOLDER
group_Info FOLDER
menu_Information
menu_SourceInformation
group_jjjHistory FOLDER
group_jjjHistory FOLDER
menu_ClearHistory
menu_PauseRecording
menu_StartRecording
menu_zSaveHistory
private FOLDER
private FOLDER
StandardHeader
group_zzzPrint FOLDER
group_zzzPrint FOLDER
menu_Print
menu_PrintPreview
menu_Export FOLDER
menu_Export FOLDER
menu_aaaExportToMATLAB
group_Bitmaps FOLDER
group_Bitmaps FOLDER
menu_ExportToBMP
menu_ExportToTIF
group_VectorFormats FOLDER
group_VectorFormats FOLDER
menu_ExportToAdobeIllustrator
menu_ExportToAdobePDF
menu_ExportToEPS
menu_Import FOLDER
menu_Import FOLDER
menu_BatchImport
group_MultiMedia Formats FOLDER
group_MultiMedia Formats FOLDER
ImportMultiMedia
ImportMultiMediaMATLAB
ImportWAV
menu_ImportMultiMedia
menu_ImportWAV
menu_aaaImportMultiMediaMATLAB
View FOLDER
View FOLDER
menu_DataViewHiRes
menu_ToggleSmoothing
menu_ToggleText
sigTOOL Cursor Functions FOLDER
sigTOOL Cursor Functions FOLDER
menu_Delete
menu_LoadCursors
menu_SaveCursors
menu_aaaNewVerticalCursor
utils FOLDER
utils FOLDER
CopyObjects
CurveFitting
FirstRunMessage
GetFit
MATImportGeneratorGUI
PasteObjects
RecordHistory
SincResample
SmoothingContextMenu
UpdateChannelTree
callbackgetparam
debounce
filtfilthd
findFirstChannel
help2doc
isMultipleCall
isOOM
jcontrolDemo
lpredict
scAddDistributionTool
scAddPlot
scBar
scBugReport
scChannelInfo
scCheckChannels
scColumn
scColumnOptionsCallback
scCommit
scContour
scCreateChannelHeader
scCreateKCLFile
scCreateNewKCLFile
scDecimate
scDeleteFigure
scDistributionTool
scDrawSelectedChannels
scEpochToVector
scExecute
scExportFigure
scFastOpen
scFastSave
scFeature
scFilter
scFindMatchingFs
scFindSynchronized
scFrames
scGenerateChannelList
scGetBaseFolder
scGetChannelValues
scGetChannelsByType
scGetCursorValues
scGetFirstSampleTime
scGetIcon
scGetSubchannelList
scGetTimePeriod
scImagesc
scImport
scImportTrigger
scInteractiveAxes
scLineSmoothing
scMakeTempChannel
scMaxSeconds
scMaxTime
scMinTime
scOpen
scParam
scPlaySound
scProcessDataView
scProgressBar
scRefreshResultManagerAxesLimits
scRegister
scRemap
scResultViewButtonMotion
scSaveAs
scSaveImportedChannel
scSavePreferences
scScatter
scSec
scSelectImporter
scSetSubchannelList
scSupportedFormats
scSurf
scVersion
scWaterfall
scWindowButtonDownFcn
scWindowKeyPressFcn
scverLessThan
adcarray FOLDER
adcarray FOLDER
adcarray
display
double
end
get
horzcat
isreal
issparse_
length
max
min
minus
set
size
subsasgn
subsref
vertcat
jcontrol FOLDER
jcontrol FOLDER
Contents
ancestor
close
delete
get
getappdata
isappdata
jcontrol
rmappdata
set
setappdata
subsasgn
subsref
private FOLDER
private FOLDER
VisibleProperty
jcontrol__ FOLDER
jcontrol__ FOLDER
Contents
ancestor
close
delete
get
getappdata
isappdata
jcontrol
rmappdata
set
setappdata
subsasgn
subsref
private FOLDER
private FOLDER
VisibleProperty
scchannel FOLDER
scchannel FOLDER
convIndex2Time
convTime2PhysicalEpochs
convTime2PhysicalIndex
convTime2ValidEpochs
convTime2ValidIndex
display
extractPhase
extractPhysicalEpochData
extractPhysicalEpochTimes
extractPhysicalFrames
extractValidEpochData
extractValidEpochTimes
extractValidFrames
findFirstChannel
findMaxPostTime
findMaxPreTime
findPhysicalEpochs
findPhysicalFrameIndices
findValidEpochs
findValidFrameIndices
findVectorIndices
get
getData
getFileName
getGroupNumber
getPhase
getPhysicalTriggers
getSampleInterval
getSampleRate
getSourceChannel
getSourceName
getTimeUnits
getTimeVector
getValidEpochNumbers
getValidTriggers
inspect
isInSynch
isMultiplexed
isSwapNeeded
plot
scchannel
set
size
subsasgn
subsref
private FOLDER
private FOLDER
ConvertTimeToIndex
sigTOOLDataView FOLDER
sigTOOLDataView FOLDER
filesaveas
get
postprinttidy
print
printprepare
printpreview
sigTOOLDataView
sigTOOLResultData FOLDER
sigTOOLResultData FOLDER
display
get
plot
set
sigTOOLResultData
subsasgn
subsref
sigTOOLResultView FOLDER
sigTOOLResultView FOLDER
filesaveas
get
postprinttidy
print
printprepare
printpreview
sigTOOLResultView
tstamp FOLDER
tstamp FOLDER
display
end
get
horzcat
length
set
size
subsasgn
subsref
tstamp
vertcat
Cursors FOLDER
Cursors FOLDER
CreateCursor
CursorDemo
CursorWindowButtonMotionFcn
DeleteCursor
GetCursorLocation
SetCursorLocation
DataView FOLDER
DataView FOLDER
scCleanUpAxes
scCreateDataView
scCreateFigControls
scDataViewDrawChannelList
scDataViewDrawData
scGetFigureType
scIncreaseXRange
scInsertLogo
scMarkerButtonDownFcn
scReduceXRange
scResizeFigControls
scSliderAct
scUpdateAxisControls
scViewImageData
scXAxisControls
ChannelManager FOLDER
ChannelManager FOLDER
scChannelManager
scChannelTreeRowToChannelList
scGetChannelTree
Export FOLDER
Export FOLDER
scSendToExternalInterface
scSendToSigBrowse
Send To FOLDER
Send To FOLDER
scSendToExcel
scSendToOrigin
scSendToSigmaPlot
MAT FOLDER
MAT FOLDER
AddDimension
AppendColumns
AppendMatrix
AppendVector
CheckIsLastEntry
Contents
CreateMatrix
GetLastEntry
MATOpen
RestoreDiscClass
VarRename
endian
where
private FOLDER
private FOLDER
AppendData
ByteAlign
ChangeDimensions
Contents
GetSmallDataElement
PadToEightByteBoundary
StandardMiCodes
StandardMxCodes
argcheck
sizeof
ResultView FOLDER
ResultView FOLDER
scDisplayResult
scPrepareResult
ResultManager FOLDER
ResultManager FOLDER
scResultManager
scUpdateResultOptionsButton
private FOLDER
private FOLDER
AxesFeatures
AxesLimits
CameraTool
DisplayMode
LineColorCallback
LineOptions
LineWidthCallback
Options3D
ResetView
ResultOptionsButton
addLabel
getPosition
private FOLDER
private FOLDER
EmailBrowse
StandardEmailDetails
getPlatform
uifunctions FOLDER
uifunctions FOLDER
jvAddAverage
jvAddCoherence
jvAddCorrelation
jvAddCurrentSourceDensity
jvAddFFT
jvAddFastICA
jvAddFrequencygram
jvAddIcasso
jvAddJPETH
jvAddPETH
jvAddPanel
jvAddPhaseHistogram
jvAddPhaseRaster
jvAddRaster
jvAddRateChannel
jvCreateUI
jvDefaultPanel
jvDisplay
jvElement
jvGetControlValue
jvLinkChannelSelectors
jvMakeFieldName
jvPanel
jvSetHelp
program FOLDER
program FOLDER
GetEmailAddress
dir2menu
external_Cursors
external_SpikeTrainToolkit
sigTOOL
sigTOOLCompileMexFiles
File FOLDER
File FOLDER
external_File
external_NeuroscienceFileImport
UiContextMenus FOLDER
UiContextMenus FOLDER
DataViewAxes FOLDER
DataViewAxes FOLDER
menu_CopyObjects
menu_PasteObjects
menu_SendTo FOLDER
menu_SendTo FOLDER
menu_SendToSigBrowse
ResultAxes FOLDER
ResultAxes FOLDER
external_Cursors
external_Export
external_SendTo
menu_ViewDetails
menu_zzzCurveFitting
group_CopyPasteObjects FOLDER
group_CopyPasteObjects FOLDER
menu_CopyObjects
menu_PasteObjects
ResultFigure FOLDER
ResultFigure FOLDER
external_Cursors
external_Edit
external_Export
external_SendToFigure
menu_ToggleSmoothing
sigTOOL Send To FOLDER
sigTOOL Send To FOLDER
menu_SendToExcel
menu_SendToOrigin
menu_SendToSigmaPlot
View FOLDER
View FOLDER
external_View
menu_Channels FOLDER
menu_Channels FOLDER
menu_EventFilter
menu_SelectSubchannel
scApplyEventFilter
scEventFilter
scSelectSubchannel
filters FOLDER
filters FOLDER
CursorEventFilter
cursorpositions
evenepochs
everynthepoch
matchall
matchany
oddepochs
private FOLDER
private FOLDER
GetMatch
menu_Waveform FOLDER
menu_Waveform FOLDER
group_Spectral Methods FOLDER
group_Spectral Methods FOLDER
menu_Autocorrelation
menu_Coherence
menu_Correlation
menu_PowerSpectra
menu_Spectrogram
group_aaaWaveform FOLDER
group_aaaWaveform FOLDER
menu_AmplitudeHistogram
menu_Average
menu_CurrentSourceDensity
menu_zzzPlaySound
menu_Independent Components FOLDER
menu_Independent Components FOLDER
Interface_to_FastICA
Interface_to_Icasso
menu_FastICA
menu_Icasso
group_zChannel Operations FOLDER
group_zChannel Operations FOLDER
menu_Decimate
menu_Filter
menu_zMakeTempChannel
menu_ChannelViewer FOLDER
menu_ChannelViewer FOLDER
cvManager
cvRawDataAxis
cvScroll
cvSetup
cvUserWindow1
menu_ChannelViewer
private FOLDER
private FOLDER
AddHelp
GenerateSectionIndices
ScrollControls
UpdateSelectedData
UpdateTableColumnNames
UpdateUitable
utils FOLDER
utils FOLDER
Interface_to_FastICA
wvAmplitudeHistogram
wvAverage
wvCoherence
wvConvertToInteger
wvCopyToTempChannel
wvCorrelation
wvCurrentSourceDensity
wvDecimate
wvFFTFilt
wvFiltFilt
wvFilter
wvFilterDesign
wvHamming
wvOnesided
wvPowerSpectra
wvWelchSpectra
sigTOOL Neuroscience Toolkit FOLDER
sigTOOL Neuroscience Toolkit FOLDER
File FOLDER
File FOLDER
menu_Import FOLDER
menu_Import FOLDER
group_NeuroScience File Formats FOLDER
group_NeuroScience File Formats FOLDER
ImportABF
ImportCFS
ImportHEKA
ImportNS
ImportSMR
ImportSTA
SelectDAT
menu_ImportABF
menu_ImportCEDCFS
menu_ImportCEDSMR
menu_ImportHEKA
menu_ImportMAP
menu_ImportMCD
menu_ImportNEV
menu_ImportNEX
menu_ImportNSN
menu_ImportPLX
menu_ImportSSD
menu_ImportSTA
CFS FOLDER
CFS FOLDER
CFSCloseCFSFile
CFSCreateBuffer
CFSFindClass
CFSGetChanData
CFSGetDSChan
CFSGetDSFlagValue
CFSGetDSFlags
CFSGetFileChan
CFSGetFileInfo
CFSGetGenInfo
CFSGetVarDesc
CFSGetVarVal
CFSOpenCFSFile
GetFrameInfo
cfs
private FOLDER
private FOLDER
sizeof
HEKA FOLDER
HEKA FOLDER
ImportHEKA
NeuroShare FOLDER
NeuroShare FOLDER
Example
ExampleAnalog
compileNeuroShare
ns_CloseFile
ns_GetAnalogData
ns_GetAnalogInfo
ns_GetEntityInfo
ns_GetEventData
ns_GetEventInfo
ns_GetFileInfo
ns_GetIndexByTime
ns_GetLastErrorMsg
ns_GetLibraryInfo
ns_GetNeuralData
ns_GetNeuralInfo
ns_GetSegmentData
ns_GetSegmentInfo
ns_GetSegmentSourceInfo
ns_GetTimeByIndex
ns_OpenFile
ns_SetLibrary
axon FOLDER
axon FOLDER
ABFGetADCChannel
ABFGetDACChannel
ABFGetFileInfo
map FOLDER
map FOLDER
new
son FOLDER
son FOLDER
Contents
MakeMATFile
OpenMATFile
SONADCToDouble
SONADCToSingle
SONChanList
SONChannelInfo
SONCreateChannel
SONFileHeader
SONGetADCChannel
SONGetADCMarkerChannel
SONGetBlockHeaders
SONGetChannel
SONGetEventChannel
SONGetMarkerChannel
SONGetRealMarkerChannel
SONGetRealWaveChannel
SONGetSampleInterval
SONGetSampleTicks
SONGetTextMarkerChannel
SONImport
SONMarkerDisplay
SONRealToADC
SONTest
SONTicksToSeconds
SONUpgradeToVersion6
SONVersion
progressbar
SON32 FOLDER
SON32 FOLDER
Contents
SONAppID
SONBlocks
SONBookFileSpace
SONCanWrite
SONChanBytes
SONChanDelete
SONChanDivide
SONChanInterleave
SONChanKind
SONChanMaxTime
SONCleanUp
SONCloseFile
SONCommitFile
SONCreateFile
SONDateTime
SONDelBlocks
SONEmptyFile
SONExtMarkAlign
SONFActive
SONFControl
SONFEqual
SONFMode
SONFileBytes
SONFileSize
SONFilter
SONGetADCData
SONGetADCInfo
SONGetChanComment
SONGetChanTitle
SONGetEventData
SONGetExtMarkData
SONGetExtMarkInfo
SONGetExtraData
SONGetExtraDataSize
SONGetFileComment
SONGetFreeChan
SONGetFreeChanl
SONGetMarkData
SONGetRealData
SONGetTimePerADC
SONGetVersion
SONGetusPerTime
SONIdealRate
SONIsSaving
SONItemSize
SONKillRange
SONLastPointsTime
SONLastTime
SONLatestTime
SONLoad
SONMaxChans
SONMaxTime
SONOpenNewFile
SONOpenOldFile
SONPhyChan
SONPhySz
SONPhysChan
SONSave
SONSaveRange
SONSetADCOffset
SONSetADCScale
SONSetADCUnits
SONSetBuffSpace
SONSetBuffering
SONSetChanComment
SONSetChanTitle
SONSetEventChan
SONSetFileClock
SONSetFileComment
SONSetInitLow
SONSetMarker
SONSetRealChan
SONSetRealMarkChan
SONSetTextMarkChan
SONSetWaveChan
SONSetWaveMarkChan
SONTimeBase
SONUpdateStart
SONWriteADCBlock
SONWriteEventBlock
SONWriteExtMarkBlock
SONWriteMarkBlock
SONWriteRealBlock
SONYRange
son32
C_Sources FOLDER
C_Sources FOLDER
compile
ssd FOLDER
ssd FOLDER
ImportSSD
Spike Train Toolkit FOLDER
Spike Train Toolkit FOLDER
gausswindow
menu_EventAutoCorrelation
menu_EventCorrelation
menu_Frequencygram
menu_InterspikeInterval
menu_JPETH
menu_JointIntervalDistribution
menu_PETH
menu_PhaseHistogram
menu_PhaseRaster
menu_Poincare
menu_Raster
menu_SpikeTriggeredAverage
group_zCreateRateChannel FOLDER
group_zCreateRateChannel FOLDER
menu_CreateRateChannel
menu_Spike Sorting FOLDER
menu_Spike Sorting FOLDER
menu_InterfaceTo_wave_clus
utils FOLDER
utils FOLDER
eventcorr
rasterprep
spCreateRateChannel
spEventCorrelation
spInterspikeInterval
spJPETH
spJointIntervalDistribution
spPeriEventFrequency
spPhaseCorrelation
spPhaseRaster
spPoincare
spRaster
jpeth FOLDER
jpeth FOLDER
display
get
getAverage
getBinWidth
getCoincidence
getCorrected
getErrors
getLabel
getMatrix
getMode
getNormalized
getRaw
getSurprise
getXcorr
jpeth
plot
plotoptions
setDisplay
setFilter
setLabel
setMode
subasgn
subsasgn
subsref
update
private FOLDER
private FOLDER
Cusum
Options3D
¶
Options3D is a function. tp = Options3D(tp)